Source code for bioblend.galaxy.visual

Contains possible interactions with the Galaxy visualization
from bioblend.galaxy.client import Client

[docs]class VisualClient(Client): def __init__(self, galaxy_instance): self.module = 'visualizations' super(VisualClient, self).__init__(galaxy_instance)
[docs] def get_visualizations(self): """ Get the list of all visualizations. :rtype: list :return: A list of dicts with details on individual visualizations. For example:: [{u'dbkey': u'eschColi_K12', u'id': u'df1c7c96fc427c2d', u'title': u'AVTest1', u'type': u'trackster', u'url': u'/api/visualizations/df1c7c96fc427c2d'}, {u'dbkey': u'mm9', u'id': u'a669f50f8bf55b02', u'title': u'Bam to Bigwig', u'type': u'trackster', u'url': u'/api/visualizations/a669f50f8bf55b02'}] """ return self._get()
[docs] def show_visualization(self, visual_id): """ Get details of a given visualization. :type visual_id: str :param visual_id: Encoded visualization ID :rtype: dict :return: A description of the given visualization. For example:: {u'annotation': None, u'dbkey': u'mm9', u'id': u'18df9134ea75e49c', u'latest_revision': { ... }, u'model_class': u'Visualization', u'revisions': [u'aa90649bb3ec7dcb', u'20622bc6249c0c71'], u'slug': u'visualization-for-grant-1', u'title': u'Visualization For Grant', u'type': u'trackster', u'url': u'/u/azaron/v/visualization-for-grant-1', u'user_id': u'21e4aed91386ca8b'} """ return self._get(id=visual_id)