Source code for bioblend.galaxy.datatypes

"""
Contains possible interactions with the Galaxy Datatype
"""
from bioblend.galaxy.client import Client


[docs]class DatatypesClient(Client): def __init__(self, galaxy_instance): self.module = 'datatypes' super(DatatypesClient, self).__init__(galaxy_instance)
[docs] def get_datatypes(self, extension_only=False, upload_only=False): """ Get the list of all installed datatypes. :rtype: list :return: A list of datatype names. For example:: [u'snpmatrix', u'snptest', u'tabular', u'taxonomy', u'twobit', u'txt', u'vcf', u'wig', u'xgmml', u'xml'] """ params = {} if extension_only: params['extension_only'] = True if upload_only: params['upload_only'] = True return self._get(params=params)
[docs] def get_sniffers(self): """ Get the list of all installed sniffers. :rtype: list :return: A list of sniffer names. For example:: [u'galaxy.datatypes.tabular:Vcf', u'galaxy.datatypes.binary:TwoBit', u'galaxy.datatypes.binary:Bam', u'galaxy.datatypes.binary:Sff', u'galaxy.datatypes.xml:Phyloxml', u'galaxy.datatypes.xml:GenericXml', u'galaxy.datatypes.sequence:Maf', u'galaxy.datatypes.sequence:Lav', u'galaxy.datatypes.sequence:csFasta'] """ url = self.gi._make_url(self) url = '/'.join([url, "sniffers"]) return self._get(url=url)